talk · Thursday 24 September · 09:38–⁠09:51 · SAL C

The Good, the Bad, and the Standardised: A Specify Journey Through 200 Years of the MfN Berlin's Biological Collections

Marion Depraetere · Meeting Biodiversity Data Standards Using Specify Software

Recording time 1:58:40–2:13:04Open on Vimeo ↗

Summaries and key moments are machine-produced. Check the recording for the speaker’s exact words.

The short versionSpecify's flexibility lets MfN consolidate 30 historically complex collections into one database while starting to reconstruct colonial and wartime history, but geography and historical events remain unsolved.

Overview

What this was about

Marion Depraetere traced how the Museum für Naturkunde Berlin's history shaped its data: colonial expeditions such as Tendaguru, the 1945 bombing, Soviet confiscation and return, Cold War isolation, pandemic-era reliance on personal Excel files, and an October 2023 cyberattack that ended debate and made Specify the sole CMS. All 30 collections are now in one Specify instance, which enables cross-collection reporting. Specify's flexibility supports decolonisation work through a one-to-many historical-events table and a prototype 'Historical Context' collection linking archive letters to specimens. She highlighted the gap between political geography (ISO 3166) and ecological or marine units, and argued that standardisation should respond to a need rather than be imposed.

Why it matters. Many large museums face the same combination of legacy heterogeneity, colonial provenance and diverse audiences. The talk shows practical data-model workarounds and the open problem of representing administrative and ecological geography together.

Key ideas

In the room

  • MfN holds about 30 million items across 30 collections and sub-collections, managed by about 60 staff and support people.
  • History affects the data: colonial expeditions, the 1945 bombing (75% of the collection saved, losses still unclear), Soviet confiscation and repatriation, and Cold War isolation.
  • Specify was first adopted in 2010 (mammals first). The pandemic reinforced personal tools. The October 2023 cyberattack halted MfN for nearly a year and confirmed Specify as the sole CMS.
  • All 30 collections sit in a single Specify instance, allowing standardisation while keeping collection-specific features and giving single-query reports (e.g. entries per year, percentage of objects with IDs).
  • For decolonisation, a repurposed one-to-many table links objects to historical events, and a prototype 'Historical Context' collection links a 1909 letter from Tanga to the objects it mentions.
  • Political boundaries (ISO 3166) aid interoperability but do not match ecological, biogeographic or marine units. Options are extra locality fields (complex, error-prone) or a second geography tree based on GeoNames or Marine Regions, not yet tested.
  • Standardisation 'must remain a response to a need rather than a solution to a problem'.
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Notable moments

In their words

Transcript

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Programme abstract

The Good, the Bad, and the Standardised: A Specify Journey Through 200 Years of the MfN Berlin’s Biological Collections

Marion Depraetere

The foundations of the Museum für Naturkunde Berlin (MfN)´s biological collections laid as early as 1810, houses today around 30 million specimens from the fields of palaeontology, zoology, botany and geology, as well as archives and modern media such as a sound library, reflecting 200 years of scientific, technical, colonial and political upheavals. Colonial collections (such as the Tendaguru excavation which returned 225 tons of dinosaur fossils), wars (the 1945 bombings destroyed a considerable number of specimens) and the Cold War isolation have left behind fragmented, multilingual and ethically complex data. Following reunification, resistance to digital transformation and the heterogeneity of legacy systems (paper labels, Excel, local databases), which persist to this day, hinder the standardisation of this complex yet essential biodiversity data. Today, we are in the process of transitioning to Specify as our sole collection management system (CMS): this powerful tool enables us to standardise metadata (Darwin Core), manage the MfN’s 22 collections, fill scientific gaps (missing labels, obsolete taxonomy) and manage permissions for over 100 users, with specific needs, whilst meeting modern requirements (GBIF exports, 3D scanning). We are also exploring ways to fill historical gaps by linking colonial archives to specimens (for example, the roles of workers at Tendaguru via Wikidata in the DTE project), using specific tables to reintegrate overlooked elements. This presentation will share the lessons learnt from 200 years of upheaval: how Specify helps to preserve biodiversity data and reconstruct history, as well as the work that remains to be done to meet all these needs.

Submitted to the conference programme before the talk, so the talk itself may differ.