talk · Tuesday 22 September · 16:15–⁠16:30 · SAL C

The Latimer Core standard and the Global Registry of Scientific Collections

Marie Grosjean · State of the Collections Description Interest Group. What's Happening and What's Not!

Recording time 7:45:45–7:57:52Open on Vimeo ↗

Summaries and key moments are machine-produced. Check the recording for the speaker’s exact words.

The short versionLatimer Core gives GRSciColl a common language and exchange format for describing collections between free text and specimen records.

Overview

What this was about

Marie Grosjean explained how GRSciColl, the community-curated registry of scientific collections and institutions maintained by GBIF, uses Latimer Core. Collection descriptors are flat tables that fill the gap between textual collection descriptions and specimen-level occurrences, using Darwin Core (dwc:) or Latimer Core (ltc:) headers; GRSciColl currently indexes Latimer Core biome type and object classification name, enabling searches such as marine algae collections by country. Latimer Core is also used as an import/export format and in editor training, but limitations include GRSciColl fields without Latimer Core equivalents (forced into measurementOrFact) and missing descriptors in exports, which will be revisited as Latimer Core's structure is formalised.

Why it matters. Collection-level description lets undigitised or geological collections become discoverable, and GRSciColl is a key real-world implementation of Latimer Core.

Key ideas

In the room

  • GRSciColl registers collections, institutions, codes and identifiers, curated by 70+ editors with Index Herbariorum as a main source; it has an API and can be embedded in GBIF hosted portals.
  • Collection descriptors capture lists of taxa, collectors, statistics etc. and can include unmapped columns that are displayed but not indexed.
  • Indexing Latimer Core biome type and object classification name allows finding non-monophyletic groupings like algae collections.
  • Missouri Botanical Garden's page is an example of a complete descriptor based on a survey.
  • Many GRSciColl fields must be modelled as measurementOrFact, which users cannot reproduce without knowing the types.
  • Plans to revise the Latimer Core export to include descriptors and follow the latest Latimer Core structure.
  • A modelling exercise in the editor curriculum, tested at a DiSSCo Flanders workshop, shows Latimer Core's flexibility.
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Notable moments

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Transcript

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Programme abstract

The Latimer Core standard and the Global Registry of Scientific Collections

Marie Grosjean

The Global Registry of Scientific Collections (GRSciColl) aims to catalogue physical scientific collections, their content, location, associated staff and institutions. GRSciColl was originally developed before the Latimer Core (LtC) Standard became ratified. It has its own model, terms and associated vocabularies. The information can be stored in different types of entities: Institution and collection entries, which contain a lot of textual descriptions. Specimen occurrence records shared on the Global Biodiversity Information Facility (GBIF) platform and linked to GRSciColl institution and collection entries. Semi-structured tables called “collection descriptor groups”. They are used to describe collection content and are associated with collection entries. In this presentation, we will show where and how GRSciColl is integrating the LtC standard: GRSciColl entries can be accessed as well as uploaded in the LtC standard. GRSciColl collection descriptors groups use the LtC terms and suggested vocabularies. The objectClassificationName term is particularly useful when capturing information about subcollections corresponding to polyphyletic groups. It allows for example to find collections containing algae: https://scientific-collections.gbif.org/collection/search? objectClassification=Algae The use of LtC standard in training material for modelling of collection data.

We will also highlight some of the challenges of this integration.

Submitted to the conference programme before the talk, so the talk itself may differ.