talk · Tuesday 22 September · 16:20–⁠16:25 · SAL B

KakraCards: An AI-Assisted Pipeline for Liberating Six Decades of Seabird Heritage Data

Kristjan Adojaan · Bots, Bits, and Biodiversity

Recording time 7:37:41–7:42:36Open on Vimeo ↗

Summaries and key moments are machine-produced. Check the recording for the speaker’s exact words.

The short versionMulti-model consensus with human adjudication builds ground truth and picks the best LLM for transcribing standardised historical cards.

Overview

What this was about

Kristjan Adojaan described digitising about 9,000 catalogue cards recording nearly 60 years of breeding data for common gulls on a small islet in western Estonia. Scanned cards are sent simultaneously to several LLMs with a card-specific prompt; agreeing answers are accepted and disagreements resolved by a human, producing a ground truth used to benchmark more models (Gemini models performed best, Mistral among the worst) for about $50 over 3,000 decodings. Data will go into PlutoF and GBIF.

Why it matters. A cheap, replicable approach for liberating long-term ecological monitoring data held on paper.

Key ideas

In the room

  • Monitoring on the islet (Kakrarahu) began in the 1960s; methodology changed little, so cards are consistent.
  • Cards have a header, ringing data, yearly nest observations and handwritten recovery notes.
  • Images are sent to several public LLMs; identical answers accepted, differences reviewed by humans, creating ground truth.
  • Benchmarking more models: Gemini best, Mistral among the lowest; about $50 for 3,000 decodings; per-card-part effectiveness computed.
  • Next: analyse confusion points, run on all ~9,000 cards, store in PlutoF and publish in GBIF.
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Notable moments

In their words

Transcript

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Programme abstract

KakraCards: An AI-Assisted Pipeline for Liberating Six Decades of Seabird Heritage Data

Kristjan Adojaan

The continuous monitoring of the Common Gull (Larus canus) breeding colony on Kakrarahu islet in the Baltic Sea, Estonia, is one of the region's longest-running ecological research projects, dating back to 1962. With continuous breeding success data collected since 1968 and ringing and age data since 1971, this project holds a vast repository of longitudinal population dynamics data. Historically, these data were recorded in field notebooks, systematized on catalogue cards, and later partially transferred to spreadsheets. Modern data collection has now transitioned to a specialized mobile application for real-time field use. This work-in-progress project outlines the ongoing effort to rescue and digitize this extensive legacy dataset using a hybrid approach of manual data entry and novel AI-based digitization techniques and store it together with the latest field data. Because the monitoring methodology has remained constant over the decades, the recovered data holds immense value for understanding long-term population dynamics. The primary goal of this initiative is to make these unique ecological data widely available following FAIR principles. While multiple open-access publication approaches will ultimately be utilized, this presentation focuses on one particular pathway. By utilizing PlutoF, a comprehensive common data space for biodiversity developed by the University of Tartu, we establish a pipeline to structure, store, and publish the historical dataset to the Global Biodiversity Information Facility (GBIF). This workflow demonstrates an effective framework for rescuing legacy mass-monitoring data and ensuring over six decades of ecological observations become globally accessible.

Submitted to the conference programme before the talk, so the talk itself may differ.